PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 358aa    MW: 39341.3 Da    PI: 5.6468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65400.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.5e-52191491129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrFhPtdee+v++yL++k+ ++++++  vi++vd++k+ePwdLp k+k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkdke+++   
  MLOC_65400.1  19 LPPGFRFHPTDEEVVTHYLTPKAVNNSFSC-LVIADVDLNKTEPWDLPGKAKMGEKEWYFFVHKDRKYPTGTRTNRATERGYWKATGKDKEIFRGkg 114
                   79**************************99.78***************99999****************************************9844 PP

           NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                    +  lvg+kktLvfy+grap+g kt  vmheyrle
  MLOC_65400.1 115 rDAVLVGMKKTLVFYTGRAPRGDKTPYVMHEYRLE 149
                   44445****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6015172IPR003441NAC domain
PROSITE profilePS5100556.8319172IPR003441NAC domain
PfamPF023656.3E-2720148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0010029Biological Processregulation of seed germination
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048527Biological Processlateral root development
GO:0051091Biological Processpositive regulation of sequence-specific DNA binding transcription factor activity
GO:0090400Biological Processstress-induced premature senescence
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1902074Biological Processresponse to salt
GO:1904250Biological Processpositive regulation of age-related resistance
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSDVTEVMDL GAEEPRLSLP PGFRFHPTDE EVVTHYLTPK AVNNSFSCLV IADVDLNKTE  60
PWDLPGKAKM GEKEWYFFVH KDRKYPTGTR TNRATERGYW KATGKDKEIF RGKGRDAVLV  120
GMKKTLVFYT GRAPRGDKTP YVMHEYRLEG QLPHRLHRSA KNDWAVCRVF DKDLAAKNAP  180
QVPPPPAAAG AMEDPYAFLD DFLNNPDLPM LMDSPSGADD FAAASSSTSS AALPLEPDTE  240
QLTIKTEPPV TQQQMQSPNY FFMPATTGSG NHGGGAGYSP YLQGAMGGDQ QAAIRRHCKP  300
EAASSSALLQ TPSLGFFDTG ALAGAADTSF PMMPSSRSYV DLEQLCRGEP PMDFSNMW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D2e-531617817174NAC domain-containing protein 19
3swp_C2e-531617817174NAC domain-containing protein 19
3swp_B2e-531617817174NAC domain-containing protein 19
3swp_A2e-531617817174NAC domain-containing protein 19
3swm_D2e-531617817174NAC domain-containing protein 19
3swm_C2e-531617817174NAC domain-containing protein 19
3swm_B2e-531617817174NAC domain-containing protein 19
3swm_A2e-531617817174NAC domain-containing protein 19
4dul_B2e-531617814171NAC domain-containing protein 19
4dul_A2e-531617814171NAC domain-containing protein 19
1ut7_B2e-531617814171NO APICAL MERISTEM PROTEIN
1ut7_A2e-531617814171NO APICAL MERISTEM PROTEIN
1ut4_B2e-531617814171NO APICAL MERISTEM PROTEIN
1ut4_A2e-531617814171NO APICAL MERISTEM PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00535DAPTransfer from AT5G39610Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646490.0AK364649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027E04.
GenBankAK3670980.0AK367098.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2051F14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461233.11e-111hypothetical protein SORBIDRAFT_02g043270
SwissprotQ9FKA02e-80NAC92_ARATH; NAC domain-containing protein 92
TrEMBLG2ZH080.0G2ZH08_HORVD; NAC transcription factor
STRINGMLOC_65400.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39610.11e-78NAC domain containing protein 6